From January - November 2002, ALL Species undertook an ambitious
project—to begin the process that would eventually ensure a
web page for every species and would link the efforts of
taxonomists worldwide through the internet in a new way.
To determine what species information already existed on
the Web, Dave Thau, our Director of Engineering, in consultation
with Kurt Bollacker, programmed taxonomically informed web
crawlers and parsers to get a complete sense of the extent of the
largest taxonomic databases online. With the subsequent help of
Hugo Llamas, our Content Manager and Interface Designer, this
multitude of data was turned into a useful search engine that
links species names to the online sources which provide information about those species.
Within 3 months, this search engine, available at
http://www.speciestoolkit.org/
became the largest publicly available resource
indexing a total of 873,979 species and 1,124,819 names.
The Species Toolkit
The next step on the way to a webpage for every species
was to expand the search engine into the Species Toolkit - an
integrated suite of tools designed to highlight the work of the
taxonomic community and help taxonomists disseminate information
about themselves and their species of interest.
Another intended design feature in the Toolkit was the Species
Page Editor, a service with which taxonomists would add species
to our search engine, create pages containing information which
may not be found elsewhere on the Web, and edit existing species
pages. Species pages would include pictures, sounds,
species descriptions, identification keys, and other
appropriate files. Species pages would also be linked from
the taxonomist profile pages.
Also included in the Toolkit design were tools to enable
taxonomists to post information about themselves and
their interests, such as a Registration System and
Taxonomist Pages. These tools were envisioned as a free
membership service that would allow taxonomists to
easily create web pages about themselves and their
areas of interest. These pages would also include pictures,
species descriptions, and other rich media. They would also
integrate with the search engine, so that each member would list his
or her taxa of expertise with links that hook directly into
the search engine.
To further support the taxonomic community, a taxonomist
Community Board prototype was designed to provide a place to
discover information about relevant projects, find out
about requests for proposals, and post and view resumes.
Our hope was that these community services would provide
one place for taxonomists to find specialists in other
areas and discover new project projects and partners.
Another application that Dave Thau and Hugo Llamas
developed in support of a webpage for every species was
the ALL Specimen Browser. This tool allows taxonomists
to easily upload and compare images of specimens within
taxa, search and browse hierarchically using data uploaded
from a database, and add descriptions. Additional context
can be added using authority files uploaded from Excel.
An example of the Specimen Browser customized for the
California Academy of Sciences database can be seen here:
http://www.antweb.org.
The Current ALL Species Toolkit Situation
Unfortunately, due to a lack of funding, full design and
deployment of the Toolkit was put on hold. However, all of
the code is freely available under the GNU Public License at
SourceForge.
Visit http://speciestoolkit.sourceforge.net/
to get the code and more extensive documentation.